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High Throughput Microbial Cultivation Lab (HTCL)

High Throughput Microbial Cultivation Lab (HTCL)

Scientist working with samples in lab

One of our major activities is the culturing of new microbial species. Our earlier research on applications of molecular biology to microbial ecology helped establish the broad and fundamental observation that a majority of the microorganisms in natural ecosystems have not been cultured in scientific laboratories.

Bacteria that have never been cultured are among the most numerous organisms on our planet. Understanding their activities is critical to the development of local and global geochemical models, as well as socially relevant issues such as bioremediation. They are also a major reservoir of natural diversity that is yielding new enzymes and small molecules for the chemical industry, agriculture, and medicine.

To address this problem, we devised and built a new experimental facility at OSU for studying high throughput microbial cultivation methods. Our facility uses robotics, flow cytometry and cell arraying techniques to culture and identify cells at the very low growth rates and nutrient concentrations that are typical of natural ecosystems.

We seek to culture these organisms because their complete genome sequences may offer one of the best sources of insight into their activities in nature, and because cell cultures provide opportunities to test hypotheses about cellular functions that arise from genome analysis.

Strains by ID

Genus/species

Lentisphaera araneosa

Location collected

Coastal Pacific Ocean, Newport, Oregon

Phylum/class

Lentisphaerae

Genus/species

Not yet validly described

Location collected

Coastal Pacific Ocean, Newport Oregon

Phylum/class

Gammaproteobacteria

Genus/species

Not yet validly described

Location collected

Coastal Pacific Ocean, Newport, Oregon

Phylum/class

Gammaproteobacteria

Genus/species

Parvularcula bermudensis

Location collected

Sargasso Sea, Atlanic Ocean, BATS

Phylum/class

Alphaproteobacteria

Genus/species

Fulvimarina pelagi

Location collected

Sargasso Sea, Atlantic Ocean, BATS

Phylum/class

Alphaproteobacteria

Genus/species

Croceibacter atlanticus

Location collected

Sargasso Sea, Atlantic Ocean, BATS

Phylum/class

Bacteriodetes

Genus/species

Robiginitalea biformata

Location collected

Sargasso Sea, Atlantic Ocean, BATS

Phylum/class

Bacteriodetes

Genus/species

Oceanicola granulosus

Location collected

Sargasso Sea, Atlantic Ocean, BATS

Phylum/class

Alphaproteobaceria

Genus/species

Oceanicola bastensis

Location collected

Sargasso Sea, Atlantic Ocean, BATS

Phylum/class

Alphaproteobacteria

Genus/species

Not yet validly described, OM42 clade

Location collected

Coastal Pacific Ocean, Newport, Oregon

Phylum/class

Alphaproteobacteria

Genus/species

Maritimibacter alkaliphilus

Location collected

Sargasso Sea, Atlantic Ocean, BATS

Phylum/class

Alphaproteobacteria

Genus/species

Not yet validly described, novel genus level

Location collected

Coastal Pacific Ocean, Newport Oregon

Phylum/class

Alphaproteobacteria

Genus/species

Not yet validly described, novel genus level

Location collected

Coastal Pacific Ocean, Newport, Oregon

Phylum/class

Bacteroidetes

Genus/species

Pelagibaca bermudensis

Location collected

Sargasso Sea, Atlantic Ocean, BATS

Phylum/class

Alphaproteobacteria

Genus/species

Janibacter sp.

Location collected

Sargasso Sea, Atlantic Ocean, BATS

Phylum/class

Actinobacteria

Genus/species

Oceanicaulis alexandrii

Location collected

Sargasso Sea, Atlantic Ocean, BATS

Phylum/class

Alphaproteobacteria

Genus/species

Erythrobacter litoralis

Location collected

Sargasso Sea, Atlantic Ocean, BATS

Phylum/class

Alphaproteobacteria

Genus/species

Candidatus 'Pelagibacter ubique' SAR11

Location collected

Coastal Pacific Ocean, Newport, Oregon

Phylum/class

Alphaproteobacteria

Genus/species

Candidatus 'Pelagibacter ubique' SAR11

Location collected

Coastal Pacific Ocean, Newport, Oregon

Phylum/class

Alphaproteobacteria

Genus/species

Not yet validly described, OM60 clade

Location collected

Coastal Pacific Ocean, Newport, Oregon

Phylum/class

Gammaproteobacteria

Genus/species

Not yet validly described, OM43 clade

Location collected

Coastal Pacific Ocean, Newport, Oregon

Phylum/class

Baetaproteobacteria

Genus/species

Not yet validly described

Location collected

Sargasso Sea, Atlantic Ocean, BATS

Phylum/class

Gammaproteobacteria

Genus/species

Not yet validly described, RCA clade

Location collected

Coastal Pacific Ocean, Newport, Oregon

Phylum/class

Alphaproteobacteria

Genus/species

Candidatus 'Pelagibacter ubique' SAR11

Location collected

Sargasso Sea, Atlantic Ocean, BATS

Phylum/class

Alphaproteobacteria

Genus/species

Not yet validly described, OM60 clade

Location collected

Coastal Pacific Ocean, Newport, Oregon

Phylum/class

Gammaproteobacteria